Vignettes¶
We offer a series of tutorials to help users master the cartloader toolkit across a range of scenarios — from simple getting-started examples to processing full-scale ST datasets.
For a more detailed explanation of each step, refer to our References Page.
Quick Start¶
If you're new to cartloader, we recommend beginning with the Quick Start tutorial.
This vignette provides a beginner-friendly walkthrough using a small mouse hippocampus dataset to walks through cartloader functions.
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Quick Start Tutorial
Getting Started per Platform¶
These tutorials show how to run the cartloader pipeline on a variety of ST platforms, using small, representative datasets.
For consistency, we curated hippocampus from the mouse brain for each platform, when possible. If hippocampal data is unavailable for a given platform, we selected another brain subregion to illustrate the process.
Warning
Each tutorial begins with data in the platform’s native format.
Sequencing-based Platforms¶
Imaging-based Platforms¶
Real-World Use Cases¶
These examples demonstrate how to process walk through real-world whole-sample ST datasets. Each example uses a whole mouse brain sample for consistency.
Warning
Tutorials will be updated.
Multi-Sample Batch Analysis¶
Warning
This function is still under development
This upcoming section will showcase how to process multiple samples in a single batch. It will include tutorials on cross-sample analysis.