Inspector¶
The Inspector helps the user to inspect the spot details.
Functionality¶
Spot Details: Inspect the details of an individual spot, such as hexagon, cell, square, or pixel.
Spot Details for a factor layer
If the layer type is Hexagon:
- Coordinates: X, Y coordinates of the spot.
- ID: Unique Hexagon ID.
- N points: Number of raw data points (e.g., transcripts) within the spot.
- Top Factor: The factor with the highest probability assignment for this spot.
- Pr(Top Factor): The probability associated with the Top Factor.
- Pr(*): Probabilities for other factors; factors with 0 probability are omitted.
If the layer type is Pixel:
- Coordinates: X, Y coordinates of the pixel.
- Gene: Genes detected in this pixel.
- Count: Expression count for each detected gene.
- Top Factor: The factor with the highest probability assignment for this pixel.
- Pr(Top Factor): The probability associated with the Top Factor.
Spot Details for a cell layer
- Coordinates: X, Y centroid coordinates of the cell.
- Cell ID: Unique Cell ID.
- Count: Total expression count in this cell.
- Top Factor: The primary factor assigned to this cell.
Spot Details for a Square layer
- Coordinates: X, Y coordinates of the square bin.
- N points: Number of data points in the bin.
- Barcode: Barcode/ID of the bin.
- Top Factor: The primary factor assigned to this bin.
Interface¶
- Inspect Button: Click to toggle the Inspector tool. Choose a mode to examine data points:
- Click Mode: Click a spot on the map to view its details in the Inspector Drawer.
- Hover Mode: Hover over a spot to view a quick summary in a pop-over tooltip.