Format raw output from different platforms¶
FICTURE only needs a file with 2D coordinates, gene/transcript ID, and the corresponding transcript count.
We have tested FICTURE on Seq-scope, Stereo-seq, CosMx SMI, Xenium, MERSCOPE, and Visium HD data. Here we document how to format the raw data from each platform to the required input files like the following example data.
examples/data/transcripts.tsv.gz
examples/data/feature.clean.tsv.gz