Tools in pmpoint

pmpoint is a collection of C++ tools that are designed to help process, visualize, and analyze sub-micron resolution spatial transcriptomics data stored in PMTiles format. The categories of software tools provided includes:

• PMTiles Tools
• pmpoint export: Extract pixel-level point data from a PMTiles file with spatial filtering options.
• pmpoint summarize: Summarize the contents of a PMTiles file, including header information, metadata, and tile statistics.
• pmpoint count-tiles: Count the number of points in each tile from a PMTiles file, optionally filtering by zoom level.
• pmpoint tile-density-stats and pmpoint tile-density-stats-mt: Compute the 2D spatial density statistics in square grids for each tile in a PMTiles file

Note

This documentation contains only a subset of primary tools implemented pmpoint. Other tools not documented here are considered non-primary tools that have limited support, and they are NOT supported officially.