Welcome to spatula documentation

This is the documentation for the spatula toolkit.

Warning

This documentation is for an actively developed software package.

Note that features and usage may change frequently.

This documentation provides information for the tools available in the main branch of the repository. However, the dev branch may contain newer tools or features that are not yet documented here.

What is spatula?

spatula is a collection of C++ tools that are designed to help analyze sub-micron resolution spatial transcriptomics data such as Seq-Scope. These tools are under active development, so they may change frequently.

Documentation Overview

This documentation provides the following information:

• Quickstart: A quick guide to get started with spatula.
• Install: How to install spatula.
• Tools: Documentation of individual tools implemented in spatula.