What information is shown for Gene layers?¶
When inspecting a specific molecule on a Gene layer, the Inspector Drawer displays information about that individual transcript or molecule.
The inspector information is organized into the following logical sections:
- Layer
- Gene Symbol: The name or symbol of the gene (e.g., Sox2).
- Header
- ID: The ID is defined by the
[X coordinate, Y coordinate].
- ID: The ID is defined by the
- Basic Metrics
- Coordinates: The spatial X and Y coordinates (in µm) of the molecule.
- Count: (If available) The unique molecular identifier (UMI) count or intensity associated with this specific point.
- Cell ID: (If available) The cell ID associated with this specific point.
- Z Location: (If available) The z-location of the molecule.
- Factor Layer Information
- Factor Layer: The factor layer.
- Top Factor: The factor associated with this specific point.
- Probability: The probability of the top factor in the factor layer.