FAQ Overview

This section provides answers to frequently asked questions about CartoScope.

Contact Us

Have a question not listed here? We are here to help!

Please submit your questions or report issues via:

• GitHub Issues: seqscope/CartoScope Issues
• Email Support: cartoscope@umich.edu

For definitions, naming conventions, and side-by-side comparisons of similar concepts, see the Concepts section.

Data Inspection

• What information is shown in factor HEX Layer?
• What information is shown in factor Cell Layer?
• What information is shown in factor Pixel Layer?
• What information is shown in Gene Layer?

Bookmark

• Public vs Unlisted Bookmarks

ROI

• What are the ROI data loading options?

Subsampling

• Why does CartoScope use an approximation for the subsampling rate?
• Why is subsampling necessary?
• Is the subsampled visualization accurate?
• How do I see 100% of the data?

Performance

• Why is my data taking so long to load?
• Why is the map laggy?
• Why is my external dataset not loading?
• What data can I export?