FAQ Overview

This section provides answers to frequently asked questions about CartoScope.

Contact Us

Have a question not listed here? We are here to help!

Please submit your questions or report issues via:

• GitHub Issues: seqscope/CartoScope Issues
• Email Support: cartoscope@umich.edu

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Data and Session

• Should I Choose a Single or Multi-Sample Session?
• Why Is a Multi-Sample Session Limited to ~15 Datasets in Chrome?

Data Inspection

• What Information Is Shown in Factor HEX Layers?
• What Information Is Shown in Factor Cell Layers?
• What Information Is Shown in Factor Pixel Layers?
• What Information Is Shown in Gene Layers?

Alias

• Which Alias Is Displayed for My Factor Layer?

Bookmark

• What Is the Difference Between Public and Unlisted Bookmarks?

Sample Comparison

• Why Are No Labels Automatically Created in My Session?
• What Happens to Comparisons When Reordering Slots?

ROI

• What Are the ROI Data Loading Options?
• What Happens When Importing ROIs into Modified Sessions?

Subsampling

• Why Does CartoScope Use Subsampling Approximations?
• Why Is Subsampling Necessary?
• Is Subsampled Visualization Accurate?
• How Do I View 100% of the Data?

Performance

• Why Is My External Dataset Not Loading?
• What Data Can I Export?
• Why Is My Dataset Loading Slowly?
• Why Is the Map Laggy?