Concepts Overview¶
Definitions of core biological concepts, algorithms, data schemas, and interface mechanisms in CartoScope.
Data & Library¶
- What is
catalog.yaml? - What is Multi-Sample Catalog YAML File (
multi-catalog.yaml)? - What is External Data?
- What is a Data Library?
Map Viewer¶
- What are Layer Types?
- What is Subsampling Rate?
- What is Total Transcripts?
- What are Gallery Mode, Focus Mode, and Dual-Focus Mode?
- What is Linked View?
Gene and Gene Group¶
Background Layers¶
Factor and Factor Assets¶
- What are Factor Layer, Factor Set, Factor, and Factor ID/Index?
- What is Typical Factor Layer Naming Scheme?
- What are Factor Layer Modes?
- What is Spatial Factor Interaction?
- What are Marker Genes?
- What is Factor Weight?
- What is Probability (Factor Assignment Confidence)?
- What is a Pseudobulk File?
- What is Multi-Sample Analysis?