Welcome to spatula documentation

This is the documentation for the spatula toolkit.

What is spatula?

spatula is a collection of C++ tools that are designed to help analyze sub-micron resolution spatial transcriptomics data such as Seq-Scope. These tools are under active development, so they may change frequently.

Documentation Overview

This documentation provides the following information:

• Quickstart: A quick guide to get started with spatula.
• Install: How to install spatula.
• Tools: Documentation of individual tools implemented in spatula.