Skip to content

Tools in spatula

spatula is a collection of C++ tools that are designed to help analyze sub-micron resolution spatial transcriptomics data such as Seq-Scope. The categories of software tools provided includes:

  • Seq-Scope Tools
  • FICTURE Tools
  • FASTQ Tools
  • Image Tools
  • Other Tools

Note

This documentation contains only a subset of primary tools that are used by other tools or pipelines including FICTURE, FICTURE2, Cartloader, and NovaScope, Other tools not documented here are considered non-primary tools that have limited support, and they are NOT supported officially.