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Tools in spatula

spatula is a collection of C++ tools that are designed to help analyze sub-micron resolution spatial transcriptomics data such as Seq-Scope. The categories of software tools provided includes:

  • Tools for Analyzing Spatial Barcodes
  • Tools for Analyzing Spatial Gene Expression (SGE)
  • Tools for Processing FASTQ Files
  • Tools for Supporting Analysis with FICTURE
  • Miscellaneous Tools

Note that the documentation contains only a subset of tools that spatula provides. Other tools not documented here is either deprecated or under active development.