FAQ Overview¶
This section answers frequently asked questions about running CartLoader.
Contact Us
To report issues or ask questions, please submit your questions or report issues via:
- GitHub Issues: seqscope/cartloader Issues
- Email Support: cartoscope@umich.edu
How to submit an issue
When reporting an issue, it'd be very helpful to include:
- Your OS/environment (Docker or local)
- Exact command that failed
- Full error message
- A minimal reproducible input if possible
Choosing How to Run¶
- Which interface should I use to run the pipeline?
- I am not sure whether to run with Docker or run locally. Which one should I choose?
- How do I choose the right tutorial for my platform?
- My platform is not in the supported list. Can I still use
CartLoader?
cartloader Function Questions¶
- How do I define scaling (
--units-per-um)? - What is
FICTUREandpunkst? - Why use Multi‑Sample FICTURE Analysis?
- How do I decide orientation for background image import?
- What are the Zenodo token and deposition ID, and how do you get them?
- Why did my AWS upload fail, and how can I fix it?